- Basic information
- CohesinDB ID: CDBP00414672
- Locus: chr21-21743434-21743673
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Data sourse: GSE72082, GSE138405, ENCSR000BLY, GSE105028, GSE25021
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Cell type: MCF-7, Hela-Kyoto, SK-N-SH, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 85%,
"9_Het": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CBX1, FOXA2, RUNX1T1, DUX4, FOXA1, ZNF823, HOXB13, RELA, CREBBP, RAD21, SP140, GRHL3, GATA3, NRIP1, ZNF143, MED1, TEAD1, NR2F1, ESR1, TRPS1, CTCF, TFAP2A, AR, GATA6, IRF4, BRD4, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops