- Basic information
- CohesinDB ID: CDBP00414675
- Locus: chr21-21751266-21751708
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Data sourse: GSE93080, ENCSR000EAC, ENCSR000DZP, GSE98367, GSE116868, GSE55407, ENCSR000BMY, GSE68388, GSE103477, GSE116344, GSE50893, GSE139435
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Cell type: GM18526, Macrophage, RH4, GM18505, Leukemia-SEM, MB157, GM12878, GM12890, THP-1, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: SMC3,Rad21,SA1,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 93%,
"9_Het": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, BCL11A, TRIM28, RUNX2, RAD21, XBP1, BRD4, CTCF, SPI1, KDM1A, YY1
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops