- Basic information
- CohesinDB ID: CDBP00414682
- Locus: chr21-21806499-21807938
-
Data sourse: ENCSR000BTQ, GSE72082, GSE115248, ENCSR000BLY, ENCSR000EHX, ENCSR703TNG, GSE25021
-
Cell type: Kelly, MCF-7, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 91%,
"9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PAX7, PGR, MYCN, CHD2, SIN3A, CTBP1, FOXA1, TWIST1, ERG, KDM1A, YY1, CREBBP, ZXDC, AHR, SMARCA4, ISL1, RAD21, ARNT, HIF1A, LHX2, GATA3, GABPA, STAT3, PBX3, FOXM1, FOS, RCOR1, HAND2, NR3C1, TEAD1, CREB1, NR2F1, ZNF217, ESR1, PKNOX1, PITX3, GRHL2, EBF3, PHOX2B, TCF12, USF1, EP300, AR, TAF1, DPF2, GATA2, REST, MAML3, FLI1, BRD4, CTBP2, MBD2, JUND, CUX1, MRTFB, TEAD4, TBX2, STAG1, TFAP2C, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 18
- Related genes and loops