- Basic information
- CohesinDB ID: CDBP00414686
- Locus: chr21-21818832-21819730
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Data sourse: ENCSR000EHX, ENCSR000BLY
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Cell type: SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 93%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MYCN, CHD2, GTF2B, DUX4, FOXA1, SRF, TWIST1, KDM1A, ASCL1, NEUROD1, SMARCA4, ISL1, RAD21, OTX2, GATA3, PRDM9, SPIB, RCOR1, HAND2, ESR1, PITX3, GRHL2, EBF3, PHOX2B, CTCF, TCF12, USF1, EP300, SPI1, GATA2, MAML3, TEAD4, TBX2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops