- Basic information
- CohesinDB ID: CDBP00414689
- Locus: chr21-21851242-21852081
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Data sourse: GSE138405, ENCSR000BLY, ENCSR000EHW, GSE152721, GSE62063, ENCSR000EHX
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Cell type: Hela-Kyoto, HAP1, SK-N-SH, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: NIPBL,SMC3,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 78%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, PGR, POU5F1, MYCN, TOP2A, SOX2, SIN3A, FOXA1, NONO, HOXB13, HOXC5, KDM1A, JUNB, NFIC, CHD7, RAD21, PBX4, ISL1, LHX2, HIF1A, GATA3, ATF2, STAT3, PBX3, FOS, RCOR1, HAND2, VDR, CEBPB, TEAD1, ETV1, PIAS1, CREB1, PHOX2B, JUN, TCF12, NUP98-HOXA9, BCL11A, EP300, BAF155, BRD2, AR, GATA2, FLI1, JUND, BRD4, TEAD4, NCOR2, PDX1, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops