- Basic information
- CohesinDB ID: CDBP00414691
- Locus: chr21-21860730-21861207
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Data sourse: GSE138405, GSE62063, ENCSR000BLY
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Cell type: Hela-Kyoto, SK-N-SH, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: NIPBL,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 85%,
"7_Enh": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NANOG, MAFG, FOXA2, POU5F1, NKX2-2, MAFF, SMAD3, FOXA1, FOXF1, MEF2C, DDX5, CDK9, SMARCC1, MEF2A, JUNB, ATF3, MYC, AHR, BRG1, SMARCA4, MCM3, PRDM1, PBX4, HIF1A, ARNT, CHD7, DAXX, GATA3, RAD21, OTX2, GRHL3, STAT3, MAX, TP63, FOS, CDK8, RCOR1, IKZF1, CEBPB, TEAD1, NR2F2, MYB, ZNF512, ESR1, C11orf30, GRHL2, EBF3, PHOX2B, JUN, NUP98-HOXA9, MAFK, TCF12, SPI1, T, AR, PAX8, HDAC2, GATA2, REST, ZNF366, SIX2, POU2F3, FLI1, BRD4, JUND, CLOCK, MRTFB, KMT2B, BRCA1, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops