- Basic information
- CohesinDB ID: CDBP00414719
- Locus: chr21-22040081-22041333
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 56%,
"9_Het": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF283, POU2F2, CHD8, CBX1, TBL1X, ZNF263, POU5F1, CRY1, KDM4C, ZFX, MYCN, XBP1, GTF2B, WT1, ZBTB48, SMAD3, TOP2A, ZSCAN5A, POU4F2, SMC1A, YY1, RELA, RUNX1T1, CDK6, SP140, GRHL3, HIF1A, MORC2, MGA, MAX, NCOA3, ESR1, OCA2, ZNF334, CTCF, GSPT2, AR, PAX3-FOXO1, E2F6, E2F4, HSF1, NOTCH3, CLOCK, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 15
- Related genes and loops