Deatailed information for cohesin site CDBP00414743
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00414743
- Locus: chr21-22186749-22186924
- Data sourse: GSE62063, ENCSR000BKV
- Cell type: K-562, Ramos
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,Rad21
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 96%,
"9_Het": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
- Related loop: chr21:21650000-21675000~~chr21:22175000-22200000, chr21:21825000-21850000~~chr21:22175000-22200000, chr21:21925000-21950000~~chr21:22175000-22200000, chr21:22000000-22025000~~chr21:22175000-22200000, chr21:22025000-22050000~~chr21:22175000-22200000, chr21:22075000-22100000~~chr21:22175000-22200000, chr21:22175000-22200000~~chr21:22275000-22300000, chr21:22175000-22200000~~chr21:22300000-22325000, chr21:22175000-22200000~~chr21:22350000-22375000, chr21:22175000-22200000~~chr21:22425000-22450000, chr21:22175000-22200000~~chr21:22475000-22500000, chr21:22175000-22200000~~chr21:22550000-22575000, chr21:22175000-22200000~~chr21:22750000-22775000, chr21:22175000-22200000~~chr21:22875000-22900000, chr21:22175000-22200000~~chr21:23375000-23400000,
Tools:
- Assay
