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Basic information

CohesinDB ID: CDBP00414746

Locus: chr21-22199038-22199929

Data sourse: GSE62063

Cell type: Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: NIPBL

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 22% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 89%, "9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOSL1, CBFA2T2, SMC1A, PGR, POU5F1, MEIS2, CTBP1, ZFX, SMAD3, PBX2, PRDM10, RELA, HDGF, EHMT2, SMARCA4, ARID1B, ARNT, PBX4, FOXK2, ZEB2, MGA, TAL1, MAX, SMARCE1, CBFA2T3, HMBOX1, IKZF1, RCOR1, FOS, TP63, CEBPD, ZNF573, PKNOX1, C11orf30, TCF12, USF1, MNT, AR, DPF2, HDAC2, GATA2, NCOR1, HNRNPLL, BRD4, ILF3, JUND, NOTCH3, TEAD4, PDX1

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 13

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00414746