- Basic information
- CohesinDB ID: CDBP00414756
- Locus: chr21-22222712-22223764
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Data sourse: GSE38395, ENCSR000EAC, GSE115250, GSE62063, ENCSR917QNE
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Cell type: GM12878, hLCL, Liver, TC-32, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: NIPBL,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
22% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFATC3, CBX5, MEF2B, POU2F2, CREM, NFATC1, MTA2, ZBED1, FOXA1, TCF7, CDK9, HOXB13, BCL3, SMARCC1, MEF2A, RELA, ZBTB2, TARDBP, ZNF597, JUNB, BMI1, NFIC, GATA4, GR, RUNX3, RAD21, PBX4, SKIL, BACH1, OTX2, ATF2, BATF3, BATF, STAT3, PAX5, FOXM1, ETV6, IKZF1, CD74, TLE3, TEAD1, BCLAF1, ZNF217, STAT5A, SPI1, BCL11A, TBX21, EP300, BHLHE40, GATA6, TAF1, DPF2, REST, IRF4, ATF7, FLI1, IKZF2, BRD4, JUND, RELB, MRTFB, AHR, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops