- Basic information
- CohesinDB ID: CDBP00414781
- Locus: chr21-22345637-22346038
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Data sourse: ENCSR000BTQ, ENCSR230ZWH, GSE72082, GSE138405, GSE25021, ENCSR000BLY, ENCSR000EHX, ENCSR703TNG, GSE126990, ENCSR917QNE
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Cell type: MCF-7, Liver, Hela-Kyoto, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
23% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, CEBPA, FOXA2, MYCN, CHD2, FOXA1, SRF, TWIST1, KDM1A, YY1, RAD21, ISL1, ARNT, GRHL3, GATA3, STAT3, RCOR1, HAND2, CEBPB, TEAD1, ESR1, PITX3, NFKB1, EBF3, PHOX2B, CTCF, TCF12, EP300, HNF4A, GATA6, GATA2, FLI1, FOXP1, MRTFB, TBX2, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops