- Basic information
- CohesinDB ID: CDBP00414783
- Locus: chr21-22351922-22352500
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Data sourse: GSE103477, GSE126990, GSE138405
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Cell type: Hela-Kyoto, THP-1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
23% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SKI, FOSL1, CEBPA, ZFX, FOXA1, SMARCC1, RAD21, HIF1A, NKX2-1, GATA3, STAT3, FOS, CDK8, RCOR1, VDR, CEBPB, JMJD1C, TRIM28, MYB, SCRT2, ESR1, JUN, CTCF, SPI1, PAX3-FOXO1, TRIM24, FLI1, SCRT1, BRD4, MRTFB, SMC3
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops