Deatailed information for cohesin site CDBP00414787
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- Basic information
- CohesinDB ID: CDBP00414787
- Locus: chr21-22361251-22361574
- Data sourse: GSE206145-NatGen2015, GSE86191
- Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21,SA2
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 23% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 83%,
"9_Het": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: ZBTB48, TRP47, SP140
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop: chr21:21925000-21950000~~chr21:22350000-22375000, chr21:21975000-22000000~~chr21:22350000-22375000, chr21:22175000-22200000~~chr21:22350000-22375000, chr21:22350000-22375000~~chr21:22725000-22750000, chr21:22350000-22375000~~chr21:23150000-23175000, chr21:22350000-22375000~~chr21:25375000-25400000,
Tools:
- Assay
