- Basic information
- CohesinDB ID: CDBP00414800
- Locus: chr21-22399265-22400806
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Data sourse: ENCSR000BTQ, GSE206145-GSE177045, GSE72082, GSE138405, GSE25021, GSE76893, GSE126990
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Cell type: MCF-7, Hela-Kyoto
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SA1,Rad21,SA2,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
23% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 90%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, NANOG, FOXA2, SIN3A, FOXA1, FOXF1, HOXB13, SMARCC1, HNF4G, ERG, RELA, CREBBP, MYC, GR, RAD21, PBX4, HIF1A, ARNT, GATA3, FOXM1, MAX, NKX3-1, TLE3, NR3C1, ESRRA, TEAD1, TFAP2C, PIAS1, KDM5B, ESR1, GRHL2, TRPS1, TCF12, BAF155, EP300, AR, GATA2, EGLN2, BRD4, JUND, TEAD4, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops