- Basic information
- CohesinDB ID: CDBP00414808
- Locus: chr21-22438491-22438822
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE72082, GSE138405, GSE105028, GSE25021
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Cell type: MCF-7, H1-hESC, Hela-Kyoto, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
23% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 84%,
"9_Het": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOSL1, POU2F2, BCL6, FOXA2, MYCN, TBL1X, CEBPA, MEIS1, ZFX, ZBTB48, WT1, FOXA1, FOXF1, SRF, ERG3, MEF2C, CDK9, ERG, RELA, RAD21, SP140, TCF4, HIF1A, BHLHE22, SPIB, CDK8, JMJD1C, MYB, PIAS1, LMO2, SETDB1, MYOD1, CTCF, SPI1, GATA2, REST, TRIM24, BRD4, KMT2B
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops