Deatailed information for cohesin site CDBP00414818
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- Basic information
- CohesinDB ID: CDBP00414818
- Locus: chr21-22489994-22490655
- Data sourse: GSE138405, GSE62063, GSE126990
- Cell type: Hela-Kyoto, Ramos
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SA2
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 23% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 95%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: NCOA2, FOXO1, FOXA2, FOXF1, FOXA1, HOXB13, SMARCC1, ERG, HOXC5, RELA, CREBBP, ONECUT1, DAXX, PBX4, RXRA, GATA3, NRIP1, TLE3, NR3C1, ESRRA, NR2F2, TCF7L2, PIAS1, ESR1, PKNOX1, NUP98-HOXA9, BAF155, AR, GATA2, HOXA9, ZIM3, BRCA1, PDX1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops
- Related gene:
- Related loop: chr21:22175000-22200000~~chr21:22475000-22500000, chr21:22475000-22500000~~chr21:22725000-22750000,
Tools:
- Assay
