- Basic information
- CohesinDB ID: CDBP00414826
- Locus: chr21-22544804-22545073
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Data sourse: ENCSR000BLD, GSE97394, ENCSR000ECE, GSE105028
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Cell type: H1-hESC, HUES64, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 85%,
"9_Het": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: BRD4, CTCF, RAD21, NOTCH3
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000154654,
- Related loop:
chr21:21225000-21250000~~chr21:22525000-22550000,
chr21:22100000-22125000~~chr21:22550000-22575000,
chr21:22175000-22200000~~chr21:22550000-22575000,
chr21:22425000-22450000~~chr21:22525000-22550000,
chr21:22525000-22550000~~chr21:22700000-22725000,
chr21:22525000-22550000~~chr21:22775000-22800000,
chr21:22525000-22550000~~chr21:23000000-23025000,
chr21:22525000-22550000~~chr21:44650000-44675000,
chr21:22550000-22575000~~chr21:22875000-22900000,