- Basic information
- CohesinDB ID: CDBP00414829
- Locus: chr21-22554333-22555989
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Data sourse: GSE138405, GSE62063, GSE126990
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Cell type: Hela-Kyoto, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SA1,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 95%,
"9_Het": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, FOXA2, TOP2A, XBP1, STAT1, FOXA1, HOXB13, ERG, ONECUT1, GR, PBX4, ARNT, RXRA, GATA3, GABPA, STAT3, NKX3-1, CHD1, TLE3, NR3C1, TEAD1, PIAS1, ELF3, NUP98-HOXA9, SPI1, BAF155, SP1, HNF4A, AR, GATA2, ARID1A, EGLN2, FLI1, BRD4, MRTFB
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 21
- Related genes and loops