- Basic information
- CohesinDB ID: CDBP00414867
- Locus: chr21-22710601-22712558
-
Data sourse: GSE62063, GSE115250
-
Cell type: TC-71, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 75%,
"9_Het": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, SMARCA2, MEIS1, RUNX1T1, HOXB13, SMARCC1, TFAP4, KDM1A, RELA, ERG, PBX1, LYL1, TAL1, STAT3, NR3C1, JMJD1C, NR2F2, TCF7L2, LMO2, EVI1, JUN, TCF12, BCL11A, SPI1, SP1, NR4A1, GATA2, FLI1, NOTCH3, BRD4, TCF3, MRTFB
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 29
- Related genes and loops