- Basic information
- CohesinDB ID: CDBP00414871
- Locus: chr21-22728222-22728472
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Data sourse: GSE62063
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Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 58%,
"9_Het": 41%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBX5, SOX2, NME2, STAT1, FOXF1, FOXA1, MPHOSPH8, ZBTB7B, ZFP36, OTX2, GATA3, STAT3, GATA1, ZNF143, CEBPB, ZNF586, TRIM28, CREB1, PIAS1, KLF9, ZNF547, SETDB1, JUN, CTCF, USF1, ZNF280A
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000154654,
- Related loop:
chr21:21050000-21075000~~chr21:22725000-22750000,
chr21:22025000-22050000~~chr21:22725000-22750000,
chr21:22350000-22375000~~chr21:22725000-22750000,
chr21:22475000-22500000~~chr21:22725000-22750000,
chr21:22525000-22550000~~chr21:22700000-22725000,
chr21:22625000-22650000~~chr21:22725000-22750000,
chr21:22725000-22750000~~chr21:22875000-22900000,
chr21:22725000-22750000~~chr21:23350000-23375000,
chr21:22725000-22750000~~chr21:23375000-23400000,
chr21:22725000-22750000~~chr21:27500000-27525000,