- Basic information
- CohesinDB ID: CDBP00414886
- Locus: chr21-22788643-22789360
-
Data sourse: GSE138405, GSE62063
-
Cell type: Hela-Kyoto, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 99%,
"9_Het": 1%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF384, FOXA1, ZNF316, FOXA2
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 10
- Related genes and loops
- Related gene:
ENSG00000154654,
- Related loop:
chr21:18275000-18300000~~chr21:22775000-22800000,
chr21:18300000-18325000~~chr21:22775000-22800000,
chr21:18500000-18525000~~chr21:22775000-22800000,
chr21:21000000-21025000~~chr21:22775000-22800000,
chr21:21150000-21175000~~chr21:22775000-22800000,
chr21:21225000-21250000~~chr21:22775000-22800000,
chr21:21350000-21375000~~chr21:22775000-22800000,
chr21:21375000-21400000~~chr21:22775000-22800000,
chr21:21450000-21475000~~chr21:22775000-22800000,
chr21:21475000-21500000~~chr21:22775000-22800000,
chr21:21500000-21525000~~chr21:22775000-22800000,
chr21:21675000-21700000~~chr21:22775000-22800000,
chr21:21750000-21775000~~chr21:22775000-22800000,
chr21:21900000-21925000~~chr21:22775000-22800000,
chr21:21920929-21923014~~chr21:22791378-22793109,
chr21:21921038-21922969~~chr21:22791400-22793101,
chr21:21925000-21950000~~chr21:22775000-22800000,
chr21:22025000-22050000~~chr21:22775000-22800000,
chr21:22075000-22100000~~chr21:22775000-22800000,
chr21:22100000-22125000~~chr21:22775000-22800000,
chr21:22375000-22400000~~chr21:22775000-22800000,
chr21:22425000-22450000~~chr21:22775000-22800000,
chr21:22525000-22550000~~chr21:22775000-22800000,
chr21:22574322-22576128~~chr21:22791315-22793094,
chr21:22574346-22576088~~chr21:22791375-22793053,
chr21:22574494-22576035~~chr21:22791361-22792986,
chr21:22775000-22800000~~chr21:23000000-23025000,
chr21:22775000-22800000~~chr21:23375000-23400000,
chr21:22775000-22800000~~chr21:23400000-23425000,
chr21:22775000-22800000~~chr21:23950000-23975000,
chr21:22775000-22800000~~chr21:25025000-25050000,
chr21:22775000-22800000~~chr21:25300000-25325000,
chr21:22775000-22800000~~chr21:32575000-32600000,
chr21:22791492-22794100~~chr21:23015838-23017548,