- Basic information
- CohesinDB ID: CDBP00414897
- Locus: chr21-22871842-22872029
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Data sourse: ENCSR000BLD, GSE25021
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Cell type: MCF-7, H1-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 84%,
"9_Het": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, ZBTB7A, POU5F1, EGLN2, EGR1, FLI1, ZFX, RAD21, GRHL2, SRF, ERG3, SETDB1, PAX5, CTCF, ZNF440, GATA1, BCL11A, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
- Related loop:
chr21:21225000-21250000~~chr21:22875000-22900000,
chr21:21500000-21525000~~chr21:22875000-22900000,
chr21:22175000-22200000~~chr21:22875000-22900000,
chr21:22550000-22575000~~chr21:22875000-22900000,
chr21:22625000-22650000~~chr21:22875000-22900000,
chr21:22725000-22750000~~chr21:22875000-22900000,
chr21:22875000-22900000~~chr21:22975000-23000000,
chr21:22875000-22900000~~chr21:23000000-23025000,
chr21:22875000-22900000~~chr21:23100000-23125000,
chr21:22875000-22900000~~chr21:23150000-23175000,
chr21:22875000-22900000~~chr21:23375000-23400000,
chr21:22875000-22900000~~chr21:23875000-23900000,