- Basic information
- CohesinDB ID: CDBP00414912
- Locus: chr21-23008840-23009084
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Data sourse: ENCSR000EHX, ENCSR000BLY
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Cell type: SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
23% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 90%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, MYCN, ZNF778, CHD2, FOXA1, TWIST1, ERG, KDM1A, RELA, NEUROD1, ISL1, PRDM1, GRHL3, TCF4, RAD21, OTX2, GATA3, PRDM9, TP63, NKX3-1, RCOR1, HAND2, TLE3, ETV1, PITX3, EBF3, PHOX2B, TCF12, BAF155, EP300, SPI1, AR, GATA2, ARID1A, TEAD4, TBX2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops