- Basic information
- CohesinDB ID: CDBP00414915
- Locus: chr21-23016338-23017116
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, ENCSR230ZWH, GSE72082, GSE126634, ENCSR000BLY, GSE105028, GSE103477, GSE111537, GSE25021, GSE108869, GSE115602, ENCSR917QNE, ENCSR000BTU, GSE115250, GSE138405, GSE76893, GSE101921, GSE152721, GSE112028, GSE138105, ENCSR703TNG, GSE116344, GSE145327, GSE94872, ENCSR000EHW, ENCSR000ECE, ENCSR000EHX, GSE97394, GSE55407, ENCSR000BTQ, GSE105004, ENCSR000EDE, GSE68388, GSE83726, GSE126990, GSE50893, ENCSR000ECS
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Cell type: RH4, GM2610, SLK, Liver, TC-32, HuCC-T1, H9-hESC, GM2630, Ishikawa, HeLa-S3, GM18486, H1-hESC, GM2588, SK-N-SH, GM19239, HeLa-Tet-On, THP-1, HUES64, MCF-7, Hela-Kyoto, MCF-10A, HUVEC, HCAEC, HeLa, TC-71, OCI-AML-3, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 19% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.700
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
23% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 84%,
"9_Het": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, SMC1A, CBX1, SIN3A, TEAD4, STAG2, XBP1, ERF, SMAD3, FOXA1, SRF, ZNF654, CDK9, HOXB13, ERG, RELA, CREBBP, RFX1, CTCFL, RAD21, PRDM1, PBX4, NFIB, HIF1A, NKX2-1, GATA3, SMC3, GABPA, NRIP1, ZNF143, NR3C1, ESRRA, ZFP69B, NCOA3, NR2F2, TEAD1, TRIM28, ETV1, PIAS1, SMAD1, ZNF217, ESR1, NCOA1, SETDB1, JUN, CTCF, POU2F1, TFAP2A, EP300, SPI1, AR, BCL11A, GATA2, FLI1, BRD4, CTBP2, FOXP1, NR5A2, SMC1, MRTFB, NCOA2, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 11
- Related genes and loops