- Basic information
- CohesinDB ID: CDBP00414926
- Locus: chr21-23101208-23101457
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Data sourse: GSE86191
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Cell type: HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
23% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 64%,
"9_Het": 34%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, TRIM25, SMC1A, POU2F2, FOXA2, AGO1, MYCN, TOP2A, TBL1X, ZFX, POU5F1, XBP1, ZBTB48, WT1, TET2, ERG, RELA, ZNF384, OGG1, ATF3, SP140, GRHL3, CBFB, STAT3, NCOA3, ESR1, AR, RXR, HEXIM1, HSF1, NOTCH3, AATF, SMC3
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops