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Basic information

CohesinDB ID: CDBP00414930

Locus: chr21-23127898-23129261

Data sourse: ENCSR000BLD, ENCSR000BTU, GSE67783, GSE138405, GSE25021, ENCSR000BLY, GSE105028, ENCSR000ECE, GSE126990, GSE50893, GSE145327, GSE97394

Cell type: MCF-7, H1-hESC, Hela-Kyoto, GM2610, Ishikawa, HUES64, SK-N-SH, HSPC, GM18486, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 5% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.889

Subunit: SA1,Rad21,SA2,SMC3

CTCF binding site: CTCF CTCF motif: False

Genomic location: TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 23% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 82%, "9_Het": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RELA, GATA6, EOMES, RAD21, HIF1A, SOX11, DUX4, BCOR, FOXA1, SMAD3, GABPA, SMC3, TEAD4, CTCF, STAG1, YY1

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00414930