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Basic information

CohesinDB ID: CDBP00414933

Locus: chr21-23152070-23152626

Data sourse: ENCSR000BLD, ENCSR000BTQ, ENCSR000BTU, GSE72082, GSE138405, GSE25021, ENCSR000BLY, ENCSR404BPV, ENCSR000EHW, GSE105028, ENCSR000ECE, ENCSR000EHX, ENCSR198ZYJ, GSE138105, ENCSR703TNG, GSE126990

Cell type: MCF-7, H1-hESC, Hela-Kyoto, Neurons-H1, SLK, Ishikawa, SK-N-SH, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 6% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.911

Subunit: SMC3,Rad21,SA2,SA1

CTCF binding site: CTCF CTCF motif: True

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 23% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 92%, "9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: NANOG, FOXA2, ZSCAN16, FOXA1, HOXB13, ERG, RELA, JUNB, AHR, RAD21, PRDM1, PBX4, HIF1A, GABPA, NKX3-1, TLE3, CREB1, PIAS1, ETV1, ESR1, CTCF, EP300, BAF155, SPI1, AR, GATA2, REST, ARID1A, BRD4, FOXP1, SMC3, STAG1, TFAP2C

Target gene symbol (double-evidenced CRMs): NCAM2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 6

Related genes and loops

Related gene: ENSG00000154654,

eachgene

Deatailed information for cohesin site CDBP00414933