Browse_each

Basic information

CohesinDB ID: CDBP00414934

Locus: chr21-23160688-23161440

Data sourse: ENCSR000BLD, GSE72082, ENCSR000BLY, GSE105028, GSE25021, GSE108869, ENCSR000BTU, GSE138405, GSE76893, GSE101921, GSE138105, ENCSR703TNG, GSE94872, ENCSR000EHW, ENCSR000EHX, GSE97394, ENCSR000BTQ, GSE105004, ENCSR000EDE, GSE126990, ENCSR000ECS

Cell type: MCF-7, H1-hESC, Hela-Kyoto, SLK, Ishikawa, HUVEC, HCAEC, HeLa-S3, HeLa, HUES64, SK-N-SH, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 8% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.867

Subunit: SA1,Rad21,SMC1,SA2,SMC3

CTCF binding site: CTCF CTCF motif: True

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 23% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 94%, "9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: SMC1A, FOXA2, TOP2A, STAG2, FOXA1, SRF, HOXB13, ERG, ONECUT1, RAD21, PRDM9, NKX3-1, CREB1, PIAS1, ESR1, CTCF, BAF155, AR, GATA2, ZNF182, EGLN2, SMC1, SMC3, STAG1

Target gene symbol (double-evidenced CRMs): NCAM2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 16

Related genes and loops

Related gene: ENSG00000154654,

eachgene

Deatailed information for cohesin site CDBP00414934