- Basic information
- CohesinDB ID: CDBP00414942
- Locus: chr21-23223951-23224279
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Data sourse: GSE105028, ENCSR404BPV
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Cell type: Neurons-H1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
23% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 84%,
"9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, CHD8, ZNF207, POU5F1, FOXA2, ZNF496, SOX2, SIN3A, FOXA1, TWIST1, RELA, CREBBP, NFIC, CHD7, RAD21, ATF2, GATA3, GABPA, STAT3, TAL1, NKX3-1, GATA1, KDM5B, TP53, ESR1, T, JUN, MAFK, BCL11A, SP1, EP300, AR, IRF1, HDAC2, GATA2, FLI1, BRD4, FOXP1, RELB, MRTFB
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops