- Basic information
- CohesinDB ID: CDBP00414945
- Locus: chr21-23273150-23273541
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Data sourse: GSE138405, GSE126990
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Cell type: Hela-Kyoto
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 94%,
"9_Het": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, MAFG, FOXA2, POU5F1, TOP2A, SS18, NME2, GTF2B, DUX4, FOXA1, DDX5, HOXB13, SMARCC1, ERG, RELA, ZNF384, OGG1, BRG1, SMARCA4, PRDM1, PBX4, ARNT, SOX11, HIF1A, GRHL3, GABPA, STAT3, NKX3-1, FOS, ZNF143, TLE3, NR3C1, PIAS1, PHOX2B, NUP98-HOXA9, MAFK, BAF155, AR, GATA2, ARID1A, ZNF777, BRD4, CTBP2, CLOCK, NCOR2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
- Related loop:
chr21:22975000-23000000~~chr21:23250000-23275000,
chr21:23100000-23125000~~chr21:23250000-23275000,
chr21:23125000-23150000~~chr21:23250000-23275000,
chr21:23150000-23175000~~chr21:23250000-23275000,
chr21:23250000-23275000~~chr21:23350000-23375000,
chr21:23250000-23275000~~chr21:23375000-23400000,
chr21:23250000-23275000~~chr21:23400000-23425000,
chr21:23250000-23275000~~chr21:23575000-23600000,
chr21:23250000-23275000~~chr21:23700000-23725000,
chr21:23275000-23300000~~chr21:23375000-23400000,
chr21:23275000-23300000~~chr21:23825000-23850000,