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Basic information

CohesinDB ID: CDBP00414958

Locus: chr21-23384688-23385090

Data sourse: ENCSR000BLD, GSE97394, GSE105028, GSE64758

Cell type: H1-hESC, HUES64, H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: NIPBL,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: False

Compartment: 26% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 74%, "9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CTNNB1, CHD8, NANOG, POU5F1, TOP2A, SS18, ZNF317, DUX4, SMAD3, FOXA1, SMARCC1, MPHOSPH8, ERG, YY1, RELA, ETS1, ONECUT1, SMAD2, SMARCA4, CHD7, RAD21, GRHL3, GABPA, STAT3, CHD1, MED1, ZEB1, TP53, SETDB1, EBF3, PHOX2B, NUP98-HOXA9, TCF12, NIPBL, SP1, AR, TAF1, HDAC2, ZNF479, CTBP2, JUND, BCOR, RBPJ

Target gene symbol (double-evidenced CRMs): NCAM2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 4

Related genes and loops

Related gene: ENSG00000154654,

eachgene

Deatailed information for cohesin site CDBP00414958