- Basic information
- CohesinDB ID: CDBP00414960
- Locus: chr21-23394155-23394961
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Data sourse: ENCSR000BLD, GSE72082, ENCSR000BLY, GSE105028, GSE25021, GSE108869, GSE138405, GSE76893, GSE101921, GSE152721, GSE138105, GSE112028, ENCSR703TNG, GSE145327, ENCSR000ECE, ENCSR000EHX, GSE97394, ENCSR000BTQ, ENCSR000EDE, GSE126990, ENCSR000ECS
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Cell type: MCF-7, H1-hESC, Hela-Kyoto, MCF-10A, SLK, HCAEC, HeLa-S3, HUES64, SK-N-SH, HeLa-Tet-On, HAP1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 7% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.867
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 93%,
"9_Het": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PHOX2B, JUN, GATA3
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 13
- Related genes and loops
- Related gene:
ENSG00000154654,
- Related loop:
chr21:21000000-21025000~~chr21:23375000-23400000,
chr21:21225000-21250000~~chr21:23375000-23400000,
chr21:21925000-21950000~~chr21:23375000-23400000,
chr21:22025000-22050000~~chr21:23375000-23400000,
chr21:22175000-22200000~~chr21:23375000-23400000,
chr21:22625000-22650000~~chr21:23375000-23400000,
chr21:22725000-22750000~~chr21:23375000-23400000,
chr21:22775000-22800000~~chr21:23375000-23400000,
chr21:22800000-22825000~~chr21:23375000-23400000,
chr21:22875000-22900000~~chr21:23375000-23400000,
chr21:22925000-22950000~~chr21:23375000-23400000,
chr21:22975000-23000000~~chr21:23375000-23400000,
chr21:23100000-23125000~~chr21:23375000-23400000,
chr21:23125000-23150000~~chr21:23375000-23400000,
chr21:23150000-23175000~~chr21:23375000-23400000,
chr21:23250000-23275000~~chr21:23375000-23400000,
chr21:23275000-23300000~~chr21:23375000-23400000,
chr21:23375000-23400000~~chr21:23475000-23500000,
chr21:23375000-23400000~~chr21:24300000-24325000,
chr21:23375000-23400000~~chr21:25300000-25325000,