- Basic information
- CohesinDB ID: CDBP00414963
- Locus: chr21-23420792-23421097
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Data sourse: GSE67783
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Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 91%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: HSF1, SP140, SMARCE1, PHOX2B, CTCF
- Target gene symbol (double-evidenced CRMs): NCAM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops
- Related gene:
ENSG00000154654,
- Related loop:
chr21:21000000-21025000~~chr21:23400000-23425000,
chr21:21850000-21875000~~chr21:23400000-23425000,
chr21:22775000-22800000~~chr21:23400000-23425000,
chr21:23100000-23125000~~chr21:23400000-23425000,
chr21:23125000-23150000~~chr21:23400000-23425000,
chr21:23250000-23275000~~chr21:23400000-23425000,
chr21:23400000-23425000~~chr21:23675000-23700000,
chr21:23400000-23425000~~chr21:23700000-23725000,
chr21:23400000-23425000~~chr21:23950000-23975000,
chr21:23400000-23425000~~chr21:24050000-24075000,
chr21:23400000-23425000~~chr21:24500000-24525000,
chr21:23400000-23425000~~chr21:25025000-25050000,
chr21:23400000-23425000~~chr21:26825000-26850000,