- Basic information
- CohesinDB ID: CDBP00414971
- Locus: chr21-23475412-23476520
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Data sourse: ENCSR000EHW, ENCSR000EHX, ENCSR000BLY, GSE138405
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Cell type: Hela-Kyoto, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
26% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 90%,
"9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MYCN, CHD2, DUX4, FOXA1, SRF, KDM1A, ERG, RARA, JUNB, NEUROD1, NFIC, ISL1, RAD21, PBX4, OTX2, GATA3, SMC3, STAT3, PBX3, FOS, RCOR1, HAND2, CEBPB, TEAD1, ESR1, PITX3, EBF3, PHOX2B, JUN, TCF12, EP300, IRF1, GATA6, GATA2, REST, RFX5, MAML3, NCOR1, MXI1, JUND, HOXA9, TEAD4, TBX2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 14
- Related genes and loops