- Basic information
- CohesinDB ID: CDBP00414977
- Locus: chr21-23531683-23532257
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Data sourse: ENCSR000BLD, GSE93080, ENCSR000EAC, ENCSR000DZP, GSE138405, GSE25021, ENCSR000BLY, ENCSR000ECE, ENCSR000EHX, GSE126990, GSE50893
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Cell type: GM10847, GM2610, GM19240, GM2630, GM2255, GM18486, GM18526, H1-hESC, SNYDER, GM18505, GM12878, GM2588, SK-N-SH, GM19239, GM19193, GM19099, MCF-7, GM12892, Hela-Kyoto, GM19238, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 8% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.767
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 92%,
"9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CEBPB, CEBPA, CLOCK, MEF2C, PHOX2B
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops