- Basic information
- CohesinDB ID: CDBP00414978
- Locus: chr21-23543397-23543675
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Data sourse: ENCSR917QNE
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Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 91%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, CEBPA, FOXA2, FOXA1, ZBTB33, TWIST1, HNF4G, HOXC5, YY1, JUNB, ATF3, ISL1, RAD21, PBX4, ARNT, DAXX, RXRA, GATA1, HAND2, CEBPB, PIAS1, CTCF, SP1, BCL11A, HNF4A, AR, GATA2, EGR1, JUND
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops