- Basic information
- CohesinDB ID: CDBP00414985
- Locus: chr21-23574880-23575370
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Data sourse: ENCSR000BLD, GSE93080, GSE138405, GSE25021, GSE105028, ENCSR000ECE, GSE145327, GSE50893, GSE97394
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Cell type: MCF-7, GM18526, H1-hESC, Hela-Kyoto, GM12878, GM18486, GM2588, HUES64, GM19238, GM2255, GM19239, GM19193, GM18951, GM19099, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.833
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, CHD8, CEBPA, ZFX, HOXB13, ERG, RELA, ATF3, CTCFL, RAD21, PRDM1, FOXP2, HIF1A, ATF4, BATF, MAX, ZNF143, CEBPB, CREB1, CTCF, BCL11A, GATA6, SCRT1, JUND, FOXP1, SMC3, ZNF175
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops