- Basic information
- CohesinDB ID: CDBP00414986
- Locus: chr21-23577912-23578520
-
Data sourse: GSE138405, GSE25021, ENCSR000BLY, ENCSR404BPV, GSE131577, GSE101921, GSE138105, GSE152721, GSE50893, ENCSR000EDE, ENCSR198ZYJ, ENCSR000EHX, GSE62063, GSE111537, GSE126990, GSE108869, ENCSR917QNE
-
Cell type: MCF-7, Hela-Kyoto, HL-60, MCF-10A, Neurons-H1, SLK, GM12878, HeLa-S3, SK-N-SH, Liver, OCI-AML-3, HAP1, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.856
- Subunit: NIPBL,SA1,Rad21,SA2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 95%,
"9_Het": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: GATA2, PIAS1, RAD21, STAG1, ESR1, GATA3, SMC3, SRF, FOXA1, PHOX2B, CTCF, STAG2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops