- Basic information
- CohesinDB ID: CDBP00414987
- Locus: chr21-23600670-23601074
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Data sourse: ShirahigeLab, ShirahigeLab-NatGen2015, GSE111913, GSE67783
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Cell type: RPE, Fibroblast, HSPC, RT-112
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"9_Het": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, ZBTB48, FOXA1, RELA, ZNF384, OGG1, SP140, PBX4, GRHL3, NKX2-1, PRDM9, FOS, CEBPB, SP7, ESR1, TP53, TP73, BCL11A, SPI1, NOTCH3, JUND, ZNF528
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops