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Basic information

CohesinDB ID: CDBP00414999

Locus: chr21-23693948-23695132

Data sourse: ENCSR000BLD, GSE72082, GSE126634, ENCSR000BLY, ENCSR404BPV, GSE103477, GSE111537, GSE25021, GSE108869, ENCSR000BKV, GSE138405, GSE152721, ENCSR198ZYJ, GSE138105, ENCSR703TNG, ENCSR000EHW, ENCSR000ECE, GSE62063, ENCSR000EHX, GSE97394, ENCSR000BTQ, ENCSR000EDE, GSE126990, ENCSR000ECS, GSE131577

Cell type: MCF-7, H1-hESC, Hela-Kyoto, HL-60, Neurons-H1, SLK, THP-1, Ramos, HeLa-S3, SK-N-SH, K-562, OCI-AML-3, HAP1, HUES64

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 7% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.844

Subunit: NIPBL,SA1,Rad21,SA2,SMC3

CTCF binding site: CTCF CTCF motif: True

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 28% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 93%, "9_Het": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: MAFG, GATA2, FOXA2, MAX, PIAS1, RAD21, STAG2, FLI1, ESR1, MAFF, FOXA1, FOXP1, SRF, PHOX2B, SMC3, CTCF, MAFK, STAG1, ZNF316

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 16

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00414999