- Basic information
- CohesinDB ID: CDBP00415003
- Locus: chr21-23740460-23740926
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Data sourse: ENCSR000BLD, ENCSR000BTU, ENCSR000BLY, GSE105028, GSE152721, ENCSR000ECE, GSE50893, ENCSR000EHX, GSE116344, GSE145327, GSE108869, GSE97394, GSE73207
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Cell type: H1-hESC, RH4, TF-1, Ishikawa, HeLa-S3, HUES64, SK-N-SH, HAP1, GM18486, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: SA1,Rad21,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, CEBPB, GATA2, TRIM28, RAD21, BRD4, FOXA1, GATA3, SRF, SPI1, STAT3, SMC3, CTCF, GATA1, IKZF1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops