- Basic information
- CohesinDB ID: CDBP00415024
- Locus: chr21-23849966-23850397
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Data sourse: GSE67783
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Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
29% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 79%,
"9_Het": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZSCAN5D, POU5F1, ZFX, XBP1, RELA, MYC, MAF1, PAX5, ZNF143, ARNTL, NCOA3, OCA2, ZNF334, SETDB1, CTCF, AR, NOTCH3, SMC3, BRCA1, STAG1, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops
- Related gene:
- Related loop:
chr21:17775000-17800000~~chr21:23825000-23850000,
chr21:23225000-23250000~~chr21:23825000-23850000,
chr21:23275000-23300000~~chr21:23825000-23850000,
chr21:23700000-23725000~~chr21:23825000-23850000,
chr21:23725000-23750000~~chr21:23825000-23850000,
chr21:23825000-23850000~~chr21:24075000-24100000,
chr21:23850000-23875000~~chr21:23950000-23975000,
chr21:23850000-23875000~~chr21:24500000-24525000,
chr21:23850000-23875000~~chr21:25300000-25325000,
chr21:23853101-23855059~~chr21:23967784-23969703,
chr21:23853126-23855655~~chr21:23967674-23970175,
chr21:23853126-23855655~~chr21:24513395-24515016,
chr21:23853141-23855184~~chr21:23967552-23970117,
chr21:23853150-23855185~~chr21:23967090-23970155,
chr21:23853165-23855136~~chr21:23967703-23969775,
chr21:23853200-23855526~~chr21:23967713-23970278,
chr21:23853226-23854721~~chr21:23968041-23969577,
chr21:23853333-23855128~~chr21:23967836-23970190,
chr21:23853384-23854703~~chr21:23967950-23969661,
chr21:23853400-23854672~~chr21:23967763-23970160,
chr21:23853410-23854705~~chr21:23968015-23969702,