- Basic information
- CohesinDB ID: CDBP00415030
- Locus: chr21-23876645-23876798
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
29% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 87%,
"9_Het": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, MAFG, CBX3, HDAC1, CREM, MTA3, NME2, MEIS2, XBP1, CTBP1, PCBP2, FOXA1, NBN, PBX2, HNRNPK, HOXC5, JUNB, ATF3, SMARCA4, ARID1B, ZNF24, PBX4, NRF1, DAXX, ATF4, ATF2, HMBOX1, SMARCE1, CBFA2T3, MAX, GATA1, IKZF1, LEF1, NFE2, RCOR1, CEBPB, ZNF592, TRIM28, NFE2L2, PKNOX1, C11orf30, GRHL2, TCF12, BCL11A, E4F1, SPI1, EP300, DPF2, HDAC2, ZBTB40, GATA2, EGLN2, RNF2, SCRT1, ILF3, JUND, E2F1, TEAD4, ATF1, ZNF316
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops