- Basic information
- CohesinDB ID: CDBP00415032
- Locus: chr21-23887103-23887947
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Data sourse: GSE67783, GSE86191, ENCSR000EDE, GSE108869, ENCSR000ECS
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Cell type: HeLa-S3, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21,SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
29% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 60%,
"9_Het": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, XBP1, FOXA1, SUZ12, RBFOX2, MITF, BACH2, ELF1, KLF6, MED26, ZFP91, CTCF, E4F1, MNT, DPF2, IRF4, TRIM24, TEAD4, EHMT2, POU2F2, POU5F1, MYCN, TOP2A, RUNX1T1, CTBP1, MTA2, ZBTB48, STAT1, ARID3A, TBP, ZNF300, ERG, SMARCA4, GRHL3, FOXK2, NFRKB, CEBPB, KMT2A, GRHL2, GABPB1, ELF4, SPI1, IRF1, HDAC2, GATA2, TAF9B, FLI1, EP400, RUNX1, MAFG, SMC1A, HDAC1, CEBPA, ZFX, IRF2, SUPT5H, CDK8, MED1, GMEB1, ZEB1, DIDO1, MYB, C11orf30, L3MBTL2, SETDB1, MAFK, ATF7, TCF3, FOXP1, SMC3, MLLT1, STAG1, WT1, MAFF, ZBTB33, CDK9, HOXB13, ZNF318, KDM1A, RELA, ZNF148, SP140, HIF1A, BATF, MGA, TAL1, MAX, KLF4, ZNF592, PHOX2B, ELF3, BRD2, TBX21, AR, TAF1, ZBTB40, HSF1, RNF2, NOTCH3, BRD4, ZNF316
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 12
- Related genes and loops