- Basic information
- CohesinDB ID: CDBP00415033
- Locus: chr21-23892791-23893084
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Data sourse: GSE206145-NatGen2015, GSE67783
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Cell type: Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
29% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 91%,
"9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF283, POU2F2, CEBPA, SIRT6, FOXA2, XBP1, GTF2B, FOXA1, HOXB13, PRDM10, ERG, RELA, HDGF, SMARCA4, PRDM1, GRHL3, PBX4, KLF12, DAXX, ARNT, STAT3, IKZF1, DACH1, TLE3, PIAS1, STAG1, BCL11A, BAF155, AR, DPF2, ZBTB40, GATA2, ZBTB7A, BRD4, MLLT1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops