- Basic information
- CohesinDB ID: CDBP00415037
- Locus: chr21-23921964-23922836
-
Data sourse: GSE67783, GSE73207
-
Cell type: TF-1, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SMC3
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
29% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 77%,
"7_Enh": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: MEIS2, FOXA1, RBFOX2, PBX2, NFIC, ATF4, SMARCE1, MITF, ELF1, TRIM28, NFE2L2, OCA2, TCF12, EP300, E4F1, MNT, DPF2, IRF4, TRIM24, SOX6, RAD51, DDX20, TEAD4, EHMT2, POU2F2, ZNF778, CTBP1, MTA2, ZBTB48, NBN, ARID3A, TBP, SMARCA4, ARID1B, FOXK2, STAT3, IKZF1, RCOR1, LEF1, ZNF639, NFRKB, CEBPB, ESRRA, STAT5B, KMT2A, TBL1XR1, SPI1, HDAC2, GATA2, EP400, CC2D1A, RUNX1, HDAC1, CREBBP, ZBTB2, NRF1, ARNT, HMBOX1, ZEB2, CBFA2T3, ETV6, FOXM1, SUPT5H, MED1, PML, CEBPD, MYB, NCOA1, L3MBTL2, STAT5A, REST, ZBTB7A, ATF7, HNRNPLL, BCOR, MLLT1, NFATC3, TRP47, CBFA2T2, MEF2B, CBX3, MTA3, CDK9, CREB3L1, KDM1A, YY1, TARDBP, NEUROD1, CHAMP1, SP140, TAL1, MAX, SPIB, GATA1, ZNF592, GFI1B, NR2F2, NR2F1, PKNOX1, TBX21, TAF1, MYNN, NCOR1, RNF2, BRD4, ILF3, MAZ, MEF2D, ZNF24
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops