- Basic information
- CohesinDB ID: CDBP00415040
- Locus: chr21-23937073-23937363
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Data sourse: GSE62063
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Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
29% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRP47, SMC1A, FOXA2, CBX3, ZFX, TEAD4, GTF2B, WT1, ZBTB48, ZSCAN5A, FOXA1, DUX4, SRF, PBX2, SMARCC1, HOXC5, ERG, RELA, ZBTB2, CREBBP, MYC, SMARCA4, CHAMP1, RAD21, SP140, ARNT, HIF1A, XRCC5, SPIB, ZNF143, IKZF1, MITF, HAND2, TEAD1, TRIM28, KMT2A, ETV1, PIAS1, SMAD1, KDM5B, LMO2, ESR1, PHOX2B, CTCF, USF1, SPI1, AR, REST, GATA2, EGLN2, HSF1, NOTCH3, BRD4, SMC1, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops