Deatailed information for cohesin site CDBP00415042
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- Basic information
- CohesinDB ID: CDBP00415042
- Locus: chr21-23948554-23948903
- Data sourse: GSE206145-NatGen2015
- Cell type: Fibroblast
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1,SA2
- CTCF binding site: CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: False Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 29% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 90%,
"9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: TRP47, OGG1, ZBTB48, ZBTB33, STAT3
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
- Related loop: chr21:21000000-21025000~~chr21:23950000-23975000, chr21:22775000-22800000~~chr21:23950000-23975000, chr21:23125000-23150000~~chr21:23950000-23975000, chr21:23400000-23425000~~chr21:23950000-23975000, chr21:23725000-23750000~~chr21:23950000-23975000, chr21:23850000-23875000~~chr21:23950000-23975000,
Tools:
- Assay
