- Basic information
- CohesinDB ID: CDBP00415059
- Locus: chr21-24045484-24046275
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, GSE126634, ENCSR000EGW, ENCSR000BLY, GSE103477, GSE25021, GSE108869, GSE115602, ENCSR000EFJ, ENCSR000BTU, ENCSR917QNE, ENCSR000DZP, ENCSR000EAC, GSE93080, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE152721, GSE135093, GSE138105, ENCSR703TNG, GSE116344, GSE94872, GSE118494, ENCSR000EEG, GSE98367, ENCSR000EHW, GSE62063, ENCSR000EHX, GSE97394, GSE105004, GSE131956, ENCSR000HPG, ENCSR000EDE, GSE68388, GSE83726, GSE126990, GSE50893, ENCSR000ECS, GSE131577
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Cell type: MDM, RH4, GM10847, GM2610, SLK, Liver, HuCC-T1, Ishikawa, HeLa-S3, GM2255, IMR-90, K-562, GM18486, GM18526, H1-hESC, SNYDER, GM12878, GM2588, GBM39, SK-N-SH, GM19239, GM19193, GM19099, HUES64, Macrophage, MCF-7, Ramos, Hela-Kyoto, HCT-116, HL-60, Hep-G2, HUVEC, GM19238, HeLa, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 15% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.611
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
20% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 68%,
"7_Enh": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, E2F7, SOX2, XBP1, FOXA1, NFIC, CTCFL, TEAD1, TRIM28, ETV1, COBLL1, ESR1, PITX3, USF2, CTCF, TCF12, JUN, BAF155, EP300, DEK, SMC1, TEAD4, RBPJ, TFAP2C, POU2F2, CHD8, MYCN, CDK7, SRF, HOXC5, ERG, PAX6, MYC, SMARCA4, RAD21, PROX1, RXRA, GABPA, STAT3, XRCC5, NKX3-1, RCOR1, ARNTL, VDR, NR3C1, CEBPB, ESRRA, EZH2, GRHL2, EBF3, EHF, GATA2, MRTFB, RUNX1, SMC1A, BCL6, NKX2-2, SIN3A, ZFX, POU4F2, SMAD3, SMARCC1, TWIST1, ZNF384, PBX4, DAXX, FOXM1, PBX3, FOS, PIAS1, SMAD1, KLF9, MAFK, BCL11A, USF1, REST, POU2F3, ZHX1, FOXP1, SMC3, STAG1, PPARG, CHD2, KDM1A, RELA, NEUROD1, JUNB, HIF1A, OTX2, GATA3, TAL1, MAX, SPIB, ZNF143, NRIP1, NCOA3, NR2F2, TCF7L2, TP53, BHLHE40, PAX3-FOXO1, AR, HSF1, NOTCH3, BRD4, JUND, CLOCK, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 14
- Related genes and loops