- Basic information
- CohesinDB ID: CDBP00415063
- Locus: chr21-24075645-24076656
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Data sourse: ENCSR000BLD, ENCSR000BLY, ENCSR404BPV, GSE103477, GSE111537, GSE25021, GSE108869, ENCSR000EFJ, ENCSR000BTU, GSE138405, GSE152721, ENCSR198ZYJ, GSE138105, GSE145327, GSE94872, ENCSR000EHW, ENCSR000ECE, ENCSR000EHX, GSE97394, GSE131956, ENCSR000HPG, ENCSR000EDE, GSE126990, ENCSR000ECS
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Cell type: MCF-7, H1-hESC, MDM, Hela-Kyoto, Neurons-H1, SLK, Ishikawa, HUVEC, HeLa-S3, HUES64, GBM39, IMR-90, SK-N-SH, OCI-AML-3, HAP1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.822
- Subunit: SMC3,Rad21,SA2,SA1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
20% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RELA, GATA2, FOXA2, PIAS1, RAD21, STAG2, XBP1, STAG1, CTCF, SPI1, FOXA1, SMARCC1, SMC3, CDK9, SUPT5H, EP300, ZNF300
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 15
- Related genes and loops